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ML Pipeline Best Practices

A practical guide to building reproducible, maintainable machine learning pipelines from data ingestion through model deployment.

Pipeline Architecture

Every ML pipeline we build follows a clear five-stage architecture. Each stage is independently testable, version-controlled, and observable.

Ingest

Pull raw data from APIs, databases, or file systems into a staging area. Use Apache Airflow or n8n for scheduling.

Clean

Handle missing values, outliers, type coercion, and deduplication. Output validated datasets with quality metrics.

Feature

Transform raw data into model-ready features. Use feature stores (Feast) for reusability across models.

Train

Train models with experiment tracking (MLflow). Log hyperparameters, metrics, and artifacts for reproducibility.

Deploy

Serve models via REST API (FastAPI) or batch prediction. Implement A/B testing and canary deployments.

Key Principles

Reproducibility

Pin all dependencies, version datasets, and log every experiment. You should be able to recreate any model from any point in time.

Monitoring

Track data drift, model performance, and prediction latency in production. Alert on degradation before it impacts users.

Testing

Unit test data transformations, integration test the pipeline end-to-end, and validate model outputs against a golden dataset.

Automation

Automate retraining triggers based on performance thresholds or scheduled intervals. Humans review before promotion.

Recommended Tooling

Orchestration

Apache Airflow for complex DAGs, n8n for simpler webhook-driven pipelines

Experiment Tracking

MLflow for local/self-hosted, Weights & Biases for managed

Feature Store

Feast for open-source, Tecton for enterprise-grade feature serving

Model Serving

FastAPI + Docker for REST endpoints, BentoML for batched inference

Data Validation

Great Expectations for data quality checks at each pipeline stage

Need help building an ML pipeline? Get in touch and we will design the right architecture for your data and use case.